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   » » Wiki: Pyrobaculum
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Pyrobaculum is a of in the family .


Description and significance
As its Latin name Pyrobaculum (the "fire stick") suggests, the is rod-shaped and isolated from locations with high temperatures. It is and its cells are surrounded by an of .

P. aerophilum is a and versatile organism. Different from other hyperthermophiles, it can live in the presence of and grows efficiently in conditions.

Pyrobaculum yellowstonensis strain WP30 was obtained from an (Joseph's Coat Hot Spring JCHS, 80 °C,  6.1, 135 μM As) in Yellowstone National Park (YNP), USA and is a and requires elemental sulfur and/or as an electron acceptor. Growth in the presence of elemental sulfur and arsenate resulted in the formation of and . The complete of this organism was (1.99 Mb, 58% G+C content), revealing numerous metabolic pathways for the degradation of , , and . Multiple dimethyl sulfoxide- (DMSO-MPT) , which are implicated in the reduction of sulfur and arsenic, were identified. Pathways for the de novo synthesis of nearly all required cofactors and were identified. The comparative genomics of P. yellowstonensis and the assembled sequence from JCHS showed that this organism is highly related (~95% average nucleotide sequence identity) to in situ populations. The attributes and metabolic capabilities of P. yellowstonensis provide an important foundation for developing an understanding of the distribution and function of these populations in YNP.


Genome structure
The first Pyrobaculum species to be sequenced was P. aerophilum. Its circular genome sequence is 2,222,430 Bp in length and contains 2605 protein-encoding sequences (CDS).


Cell structure and metabolism
Under anaerobic conditions, the archaeon reduces nitrate to molecular nitrogen via the denitrification pathway. Most species grow either chemolithoautotrophically by sulfur reduction or organotrophically by sulfur respiration or by fermentation. Cells are rod-shaped with almost rectangular ends and are about 1.5–8 * 0.5–0.6 μm. Pyrobaculum is motile because of peritrichous or bipolar polytrichous flagellation, and its colonies are round and grey to greenish black. The species are either facultatively aerobic or strictly anaerobic. The growth was observed on yeast extract, , extract of meat, but not on , , , , , , , , , , , , and .

The first of the Pyrobaculum species to be genetically sequenced, P. aerophilum (rod-shaped, 3–8 * 0.6 μm), has a rare characteristic for an archaeon because it is capable of aerobic respiration (aerophilum = "air-loving"). This is evident from the fact that the archaeon grew only in the presence of oxygen when nitrate was absent. It produces colonies that are round and greyish yellow. It utilizes both organic (maximal cell densities were observed with complex organics such as yeast extract, meat extract, tryptone, and peptone as substrates) and inorganic compounds during aerobic and anaerobic respiration. Also, use of elemental sulphur for growth was observed. Further, P. aerophilum grows between 75 and 104 °C with an optimal growth temperature at 100 °C.

In stationary phase cultures, Pyrobaculum calidifontis cells were observed to aggregate. The aggregation is likely to be mediated by archaeal bundling pili (ABP), which assemble into highly ordered bipolar bundles. The bipolar nature of these bundles most likely arises from the association of filaments from at least two or more different cells. The component protein, AbpA, shows homology, both at the sequence and structural level, to the bacterial protein TasA, a major component of the extracellular matrix in bacterial , contributing to biofilm stability.


Ecology
To this date, the strains of Pyrobaculum have been isolated from neutral to slightly alkaline boiling solfataric waters and shallow marine hydrothermal systems. P. aerophilum was isolated from a boiling marine water hole at Maronti Beach, Ischia, Italy. Further studies show that P. aerophilum grows under strictly anaerobic conditions with nitrate as the electron acceptor.


Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI)


See also
  • Pyrobaculum asR3 small RNA
  • List of Archaea genera


Further reading
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